February 27, 2017

THERE ARE NO DARWINISTS ANYMORE:

How Life (and Death) Spring From Disorder : Life was long thought to obey its own set of rules. But as simple systems show signs of lifelike behavior, scientists are arguing about whether this apparent complexity is all a consequence of thermodynamics. (Philip Ball, 1/26/17, Quanta)


According to thermodynamics, the capacity to extract useful work from the energy resources of the universe is always diminishing. Pockets of energy are declining, concentrations of heat are being smoothed away. In every physical process, some energy is inevitably dissipated as useless heat, lost among the random motions of molecules. This randomness is equated with the thermodynamic quantity called entropy -- a measurement of disorder -- which is always increasing. That is the second law of thermodynamics. Eventually all the universe will be reduced to a uniform, boring jumble: a state of equilibrium, wherein entropy is maximized and nothing meaningful will ever happen again.

Are we really doomed to that dreary fate? Maxwell was reluctant to believe it, and in 1867 he set out to, as he put it, "pick a hole" in the second law. His aim was to start with a disordered box of randomly jiggling molecules, then separate the fast molecules from the slow ones, reducing entropy in the process.

Imagine some little creature -- the physicist William Thomson later called it, rather to Maxwell's dismay, a demon -- that can see each individual molecule in the box. The demon separates the box into two compartments, with a sliding door in the wall between them. Every time he sees a particularly energetic molecule approaching the door from the right-hand compartment, he opens it to let it through. And every time a slow, "cold" molecule approaches from the left, he lets that through, too. Eventually, he has a compartment of cold gas on the right and hot gas on the left: a heat reservoir that can be tapped to do work.

This is only possible for two reasons. First, the demon has more information than we do: It can see all of the molecules individually, rather than just statistical averages. And second, it has intention: a plan to separate the hot from the cold. By exploiting its knowledge with intent, it can defy the laws of thermodynamics.

At least, so it seemed. It took a hundred years to understand why Maxwell's demon can't in fact defeat the second law and avert the inexorable slide toward deathly, universal equilibrium. And the reason shows that there is a deep connection between thermodynamics and the processing of information -- or in other words, computation. The German-American physicist Rolf Landauer showed that even if the demon can gather information and move the (frictionless) door at no energy cost, a penalty must eventually be paid. Because it can't have unlimited memory of every molecular motion, it must occasionally wipe its memory clean -- forget what it has seen and start again -- before it can continue harvesting energy. This act of information erasure has an unavoidable price: It dissipates energy, and therefore increases entropy. All the gains against the second law made by the demon's nifty handiwork are canceled by "Landauer's limit": the finite cost of information erasure (or more generally, of converting information from one form to another).

Living organisms seem rather like Maxwell's demon. Whereas a beaker full of reacting chemicals will eventually expend its energy and fall into boring stasis and equilibrium, living systems have collectively been avoiding the lifeless equilibrium state since the origin of life about three and a half billion years ago. They harvest energy from their surroundings to sustain this nonequilibrium state, and they do it with "intention." Even simple bacteria move with "purpose" toward sources of heat and nutrition. In his 1944 book What is Life?, the physicist Erwin Schrödinger expressed this by saying that living organisms feed on "negative entropy."

They achieve it, Schrödinger said, by capturing and storing information. Some of that information is encoded in their genes and passed on from one generation to the next: a set of instructions for reaping negative entropy. Schrödinger didn't know where the information is kept or how it is encoded, but his intuition that it is written into what he called an "aperiodic crystal" inspired Francis Crick, himself trained as a physicist, and James Watson when in 1953 they figured out how genetic information can be encoded in the molecular structure of the DNA molecule.

A genome, then, is at least in part a record of the useful knowledge that has enabled an organism's ancestors -- right back to the distant past -- to survive on our planet. According to David Wolpert, a mathematician and physicist at the Santa Fe Institute who convened the recent workshop, and his colleague Artemy Kolchinsky, the key point is that well-adapted organisms are correlated with that environment. If a bacterium swims dependably toward the left or the right when there is a food source in that direction, it is better adapted, and will flourish more, than one  that swims in random directions and so only finds the food by chance. A correlation between the state of the organism and that of its environment implies that they share information in common. Wolpert and Kolchinsky say that it's this information that helps the organism stay out of equilibrium -- because, like Maxwell's demon, it can then tailor its behavior to extract work from fluctuations in its surroundings. If it did not acquire this information, the organism would gradually revert to equilibrium: It would die.

Looked at this way, life can be considered as a computation that aims to optimize the storage and use of meaningful information. And life turns out to be extremely good at it. Landauer's resolution of the conundrum of Maxwell's demon set an absolute lower limit on the amount of energy a finite-memory computation requires: namely, the energetic cost of forgetting. The best computers today are far, far more wasteful of energy than that, typically consuming and dissipating more than a million times more. But according to Wolpert, "a very conservative estimate of the thermodynamic efficiency of the total computation done by a cell is that it is only 10 or so times more than the Landauer limit."

The implication, he said, is that "natural selection has been hugely concerned with minimizing the thermodynamic cost of computation. It will do all it can to reduce the total amount of computation a cell must perform." In other words, biology (possibly excepting ourselves) seems to take great care not to overthink the problem of survival. This issue of the costs and benefits of computing one's way through life, he said, has been largely overlooked in biology so far.

So living organisms can be regarded as entities that attune to their environment by using information to harvest energy and evade equilibrium. Sure, it's a bit of a mouthful. But notice that it said nothing about genes and evolution, on which Mayr, like many biologists, assumed that biological intention and purpose depend.

How far can this picture then take us? Genes honed by natural selection are undoubtedly central to biology. But could it be that evolution by natural selection is itself just a particular case of a more general imperative toward function and apparent purpose that exists in the purely physical universe? It is starting to look that way.

Adaptation has long been seen as the hallmark of Darwinian evolution. But Jeremy England at the Massachusetts Institute of Technology has argued that adaptation to the environment can happen even in complex nonliving systems.

Adaptation here has a more specific meaning than the usual Darwinian picture of an organism well-equipped for survival. One difficulty with the Darwinian view is that there's no way of defining a well-adapted organism except in retrospect. The "fittest" are those that turned out to be better at survival and replication, but you can't predict what fitness entails. Whales and plankton are well-adapted to marine life, but in ways that bear little obvious relation to one another.

England's definition of "adaptation" is closer to Schrödinger's, and indeed to Maxwell's: A well-adapted entity can absorb energy efficiently from an unpredictable, fluctuating environment. It is like the person who keeps his footing on a pitching ship while others fall over because she's better at adjusting to the fluctuations of the deck. Using the concepts and methods of statistical mechanics in a nonequilibrium setting, England and his colleagues argue that these well-adapted systems are the ones that absorb and dissipate the energy of the environment, generating entropy in the process.

Complex systems tend to settle into these well-adapted states with surprising ease, said England: "Thermally fluctuating matter often gets spontaneously beaten into shapes that are good at absorbing work from the time-varying environment".

There is nothing in this process that involves the gradual accommodation to the surroundings through the Darwinian mechanisms of replication, mutation and inheritance of traits. 

Posted by at February 27, 2017 6:29 AM

  

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